Textbook
Bioinformatics Algorithms by Compeau and Pevzner
Piazza
Lecture Slides
- Introduction to computational biology
- Finding Motifs
- Genome assembly
- Sequence alignment
- Evolution and phylogenetic trees
Labs
- Lab 1: Searching for a bacterial replication origin
- Lab 2: DosR binding site motif search in Mycobacterium tuberculosis | upstream250.fasta
- Lab 3: Genome assembly | C_ruddii.fasta | lab3.py
- Lab 4: Comparative analysis of genes associated with the eyeless phenotype | eyeless | PAX6 | lcs.py
- Lab 5: Evolutionary analysis of COVID-19 genomes
- Lab 6: Cellular automata simulations of tumor growth
- Lab report guidelines